PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G027400.1
Common NameB456_011G027400, LOC105777534
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 221aa    MW: 25490.5 Da    PI: 8.472
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G027400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.31e-32241282103
                         HHHHHHHHHC............TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
        HSF_DNA-bind   2 Flkklyeile............deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                         Fl k+y +le            +++ k+++sw+++g+ fvv+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         we
  Gorai.011G027400.1  24 FLAKTYALLEegeeeesgeegcSRRRKKIVSWNDEGTGFVVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSRR---------WE 105
                         99********6666555555555599**************************************************9998.........** PP

                         EEESXXXXXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                         Fkh++F++g k++l +i rkkse
  Gorai.011G027400.1 106 FKHEKFQRGYKQMLMEITRKKSE 128
                         ********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3415120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-4020125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-2620125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-2824125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MMSNKMSSNY SSLSSPKAKG PAPFLAKTYA LLEEGEEEES GEEGCSRRRK KIVSWNDEGT  60
GFVVWSPAEF SDLTLPRYFK HNNFSSFIRQ LNTYGFKKTS SRRWEFKHEK FQRGYKQMLM  120
EITRKKSEPS VFPAFLKASS SSDDHQDHHH HQIMNGGSSA VDEESTYVHR QTLMEENQNL  180
RREKVELQTQ IAQFKDLQIK LLDCIAQHTG TSDHKETRLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-1511253129Heat shock factor protein 1
5d5v_B1e-1511253129Heat shock factor protein 1
5d5v_D1e-1511253129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674140.0KR067414.1 Gossypium hirsutum HSF33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456316.11e-167PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A0D2UN801e-166A0A0D2UN80_G
STRINGPOPTR_0011s05130.17e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-34heat shock transcription factor B2A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]